Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2645727..2645936 | Replicon | chromosome |
| Accession | NZ_CP104284 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii strain JT.WLB1A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2645740..2645843 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2645727..2645936 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N2K85_RS12420 (N2K85_12420) | 2641995..2643443 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N2K85_RS12425 (N2K85_12425) | 2643550..2643789 | + | 240 | WP_003859885.1 | YebV family protein | - |
| N2K85_RS12430 (N2K85_12430) | 2643824..2644468 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| N2K85_RS12435 (N2K85_12435) | 2644636..2645616 | + | 981 | WP_047057152.1 | VirK/YbjX family protein | - |
| N2K85_RS12440 (N2K85_12440) | 2645662..2645859 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2645727..2645936 | + | 210 | - | - | Antitoxin |
| - | 2645740..2645843 | - | 104 | - | - | Toxin |
| N2K85_RS12445 (N2K85_12445) | 2645985..2646323 | - | 339 | WP_003859787.1 | YebY family protein | - |
| N2K85_RS12450 (N2K85_12450) | 2646340..2647209 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| N2K85_RS12455 (N2K85_12455) | 2647211..2647582 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| N2K85_RS12460 (N2K85_12460) | 2647720..2647950 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| N2K85_RS12465 (N2K85_12465) | 2648062..2648712 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| N2K85_RS12470 (N2K85_12470) | 2648737..2649399 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257464 NZ_CP104284:c2645843-2645740 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT257464 NZ_CP104284:2645727-2645936 [Enterobacter hormaechei subsp. steigerwaltii]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
