Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2652102..2652373 | Replicon | chromosome |
| Accession | NZ_CP104206 | ||
| Organism | Escherichia coli strain hubt-sl | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2652140..2652243 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2652102..2652373 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1H45_RS12990 | 2649259..2650698 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N1H45_RS12995 | 2650816..2651052 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N1H45_RS13000 | 2651157..2651348 | + | 192 | WP_001296140.1 | YebW family protein | - |
| N1H45_RS13005 | 2651349..2652005 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2652102..2652373 | + | 272 | - | - | Antitoxin |
| - | 2652140..2652243 | - | 104 | - | - | Toxin |
| N1H45_RS13010 | 2652401..2652742 | - | 342 | WP_000976472.1 | YebY family protein | - |
| N1H45_RS13015 | 2652755..2653627 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| N1H45_RS13020 | 2653631..2654005 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| N1H45_RS13025 | 2654144..2654374 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N1H45_RS13030 | 2654476..2655132 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N1H45_RS13035 | 2655156..2655818 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257404 NZ_CP104206:c2652243-2652140 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT257404 NZ_CP104206:2652102-2652373 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
