Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ParE-CopA/RHH(antitoxin)
Location 1227948..1228498 Replicon chromosome
Accession NZ_CP104202
Organism Chlorobaculum sp. MV4-Y

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag NY406_RS05935 Protein ID WP_260533211.1
Coordinates 1227948..1228235 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name copA Uniprot ID -
Locus tag NY406_RS05940 Protein ID WP_260533212.1
Coordinates 1228223..1228498 (-) Length 92 a.a.

Genomic Context

NY406_RS05915NY406_RS05920NY406_RS05925NY406_RS05930NY406_RS05960NY406_RS05935NY406_RS05940NY406_RS05945NY406_RS05950NY406_RS05955NY406_RS05965
Location: 1223063..1223629 (567 bp)
Type: Others
Protein ID: WP_260533208.1
Location: 1223805..1224740 (936 bp)
Type: Others
Protein ID: WP_260533209.1
Location: 1224844..1226820 (1977 bp)
Type: Others
Protein ID: WP_260533210.1
Location: 1226888..1227043 (156 bp)
Type: Others
Protein ID: WP_260633755.1
Location: 1230288..1231343 (1056 bp)
Type: Others
Protein ID: WP_260533215.1
Location: 1227948..1228235 (288 bp)
Type: Toxin
Protein ID: WP_260533211.1
Location: 1228223..1228498 (276 bp)
Type: Antitoxin
Protein ID: WP_260533212.1
Location: 1228558..1228914 (357 bp)
Type: Others
Protein ID: WP_260633756.1
Location: 1228930..1229205 (276 bp)
Type: Others
Protein ID: WP_260533213.1
Location: 1229517..1229936 (420 bp)
Type: Others
Protein ID: WP_260533214.1
Location: 1231446..1233179 (1734 bp)
Type: Others
Protein ID: WP_260533216.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
NY406_RS05915 (NY406_05915)1223063..1223629+567WP_260533208.1nitroreductase family protein-
NY406_RS05920 (NY406_05920)1223805..1224740+936WP_260533209.1hypothetical protein-
NY406_RS05925 (NY406_05925)1224844..1226820+1977WP_260533210.1bifunctional UDP-sugar hydrolase/5'-nucleotidase-
NY406_RS05930 (NY406_05930)1226888..1227043+156WP_260633755.1hypothetical protein-
NY406_RS05935 (NY406_05935)1227948..1228235-288WP_260533211.1type II toxin-antitoxin system RelE/ParE family toxinToxin
NY406_RS05940 (NY406_05940)1228223..1228498-276WP_260533212.1ribbon-helix-helix protein, CopG familyAntitoxin
NY406_RS05945 (NY406_05945)1228558..1228914-357WP_260633756.1HAD family acid phosphatase-
NY406_RS05950 (NY406_05950)1228930..1229205-276WP_260533213.1hypothetical protein-
NY406_RS05955 (NY406_05955)1229517..1229936-420WP_260533214.1OsmC family protein-
NY406_RS05960 (NY406_05960)1230288..1231343+1056WP_260533215.1rod shape-determining protein-
NY406_RS05965 (NY406_05965)1231446..1233179-1734WP_260533216.1caspase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin

Ribbon-helix-helix protein, CopG

(9-44)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10785.38 Da        Isoelectric Point: 6.7271

>T257389 WP_260533211.1 NZ_CP104202:c1228235-1227948 [Chlorobaculum sp. MV4-Y]
VPEIKWLPEALVDVERLHAFLHEKSPDAASRAARVILDGAGLLQSIPEIGRPMNDETGRRELVISFGAGAFVLRYIWDKN
DTVVIIRVWHSRENR

Download         Length: 288 bp

Antitoxin


Download         Length: 92 a.a.        Molecular weight: 10921.38 Da        Isoelectric Point: 6.7173

>AT257389 WP_260533212.1 NZ_CP104202:c1228498-1228223 [Chlorobaculum sp. MV4-Y]
MSKTKTKGVKLDDTTHKRLEELARIRDRSPHWLMCRAIETYLDREEKYEEEKREDMDRWERYQLTGIAVTHEKAAEWLEN
LAEGKVTACPR

Download         Length: 276 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References