Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1916646..1916791 | Replicon | chromosome |
| Accession | NZ_CP104196 | ||
| Organism | Klebsiella pneumoniae strain CHN23026 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1916682..1916784 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1916646..1916791 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N3931_RS09375 (N3931_09375) | 1911776..1913836 | + | 2061 | WP_206925937.1 | oligopeptidase B | - |
| N3931_RS09380 (N3931_09380) | 1913840..1914499 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| N3931_RS09385 (N3931_09385) | 1914578..1914808 | - | 231 | WP_040147502.1 | DNA polymerase III subunit theta | - |
| N3931_RS09390 (N3931_09390) | 1914921..1915295 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| N3931_RS09395 (N3931_09395) | 1915299..1916168 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| N3931_RS09400 (N3931_09400) | 1916185..1916523 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1916646..1916791 | - | 146 | - | - | Antitoxin |
| - | 1916682..1916784 | + | 103 | - | - | Toxin |
| N3931_RS09405 (N3931_09405) | 1917159..1917302 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| N3931_RS09410 (N3931_09410) | 1917407..1918375 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| N3931_RS09415 (N3931_09415) | 1918532..1919185 | + | 654 | WP_016529030.1 | protein-serine/threonine phosphatase | - |
| N3931_RS09420 (N3931_09420) | 1919182..1919373 | - | 192 | WP_002911395.1 | YebW family protein | - |
| N3931_RS09425 (N3931_09425) | 1919471..1919710 | - | 240 | WP_002911393.1 | YebV family protein | - |
| N3931_RS09430 (N3931_09430) | 1919826..1921259 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T257376 NZ_CP104196:1916682-1916784 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT257376 NZ_CP104196:c1916791-1916646 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
