257356

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) rlegTA/AbiEii-AbiEi
Location 2102809..2104288 Replicon plasmid pCB3060_1
Accession NZ_CP104159
Organism Rhizobium tropici strain CB3060

Toxin (Protein)


Gene name rlegT Uniprot ID -
Locus tag N2601_RS28870 Protein ID WP_260304479.1
Coordinates 2102809..2103678 (-) Length 290 a.a.

Antitoxin (Protein)


Gene name rlegA Uniprot ID -
Locus tag N2601_RS28875 Protein ID WP_260304480.1
Coordinates 2103671..2104288 (-) Length 206 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N2601_RS28850 (N2601_28850) 2098971..2100260 - 1290 WP_260304473.1 MFS transporter -
N2601_RS28855 (N2601_28855) 2100401..2100817 - 417 WP_260304475.1 heme-binding protein -
N2601_RS28860 (N2601_28860) 2100889..2101587 - 699 WP_260304476.1 type 1 glutamine amidotransferase domain-containing protein -
N2601_RS28865 (N2601_28865) 2101740..2102651 + 912 WP_260304477.1 LysR family transcriptional regulator -
N2601_RS28870 (N2601_28870) 2102809..2103678 - 870 WP_260304479.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
N2601_RS28875 (N2601_28875) 2103671..2104288 - 618 WP_260304480.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein Antitoxin
N2601_RS28880 (N2601_28880) 2104595..2105020 - 426 WP_260304481.1 hypothetical protein -
N2601_RS28885 (N2601_28885) 2105095..2105592 - 498 WP_260304482.1 histidine kinase -
N2601_RS28890 (N2601_28890) 2106216..2107295 - 1080 WP_260304483.1 alkene reductase -
N2601_RS28895 (N2601_28895) 2107326..2108066 - 741 WP_260304484.1 SDR family oxidoreductase -
N2601_RS28900 (N2601_28900) 2108168..2109136 + 969 WP_260304485.1 LysR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - katA / icl 1..2260376 2260376


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(38-261)

Antitoxin

Transcriptional regulator, AbiEi antitoxin

(18-55)


Sequences

Toxin        


Download         Length: 290 a.a.        Molecular weight: 32436.09 Da        Isoelectric Point: 5.1020

>T257356 WP_260304479.1 NZ_CP104159:c2103678-2102809 [Rhizobium tropici]
MAKEIRNLGASVRARLLQLAKASGQTFDLVLTRFALERLLFRLSQSPHAGRFVLKGAMLMMSWFDDPHRGTRDLDLLGFG
DPEPDPMLETFRDILAQQADDGVTFDAETLRVDRIREGLEYGGLRLRMVASISGARVNLTVDIGFGDALEPGAEMLDYPS
MLDFPAPRLRAYARETVIAEKFQAMVMLGRANSRMKDFYDIWILSRSFDFNDDRLARAITATFERRDTPIPTEVPDALTD
AFAKDEEKQRQWHAFAESVAHEPGNLTDVIAEIATFLMPHAVAAARLGK

Download         Length: 870 bp

Antitoxin


Download         Length: 206 a.a.        Molecular weight: 22315.67 Da        Isoelectric Point: 9.9240

>AT257356 WP_260304480.1 NZ_CP104159:c2104288-2103671 [Rhizobium tropici]
MPGSVTQRQIARTVLVERGIARLAELRNAGVTAATMSRMERDGEVMRLSRGLYQLADAELDTNHSLAEAAKRAPKAVICL
VSALAFHGLTDQLPRHVWIAIGRRDWAPKPDGTPIRVARFTENLLNEGIETHTVEGVPVKIFGVAKTIADCFRYRNKIGL
SVAIEGLQEALRQRKATPGEIADQAERGGVGTVIRPYVEALTANG

Download         Length: 618 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References