257353

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ParE-CopA/ParE-RHH
Location 3856746..3857311 Replicon chromosome
Accession NZ_CP104158
Organism Rhizobium tropici strain CB3060

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag N2601_RS18525 Protein ID WP_104821614.1
Coordinates 3857018..3857311 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name copA Uniprot ID -
Locus tag N2601_RS18520 Protein ID WP_104821613.1
Coordinates 3856746..3857030 (+) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N2601_RS18500 (N2601_18500) 3852199..3853836 + 1638 WP_104821609.1 ABC transporter ATP-binding protein -
N2601_RS18505 (N2601_18505) 3853849..3854808 + 960 WP_104821610.1 glyoxylate/hydroxypyruvate reductase A -
N2601_RS18510 (N2601_18510) 3854886..3855155 + 270 WP_158704412.1 hypothetical protein -
N2601_RS18515 (N2601_18515) 3855354..3856658 + 1305 WP_104821612.1 nicotinate phosphoribosyltransferase -
N2601_RS18520 (N2601_18520) 3856746..3857030 + 285 WP_104821613.1 CopG family transcriptional regulator Antitoxin
N2601_RS18525 (N2601_18525) 3857018..3857311 + 294 WP_104821614.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N2601_RS18530 (N2601_18530) 3857323..3858288 - 966 WP_245463960.1 hypothetical protein -
N2601_RS18535 (N2601_18535) 3858453..3860615 + 2163 WP_104821615.1 mechanosensitive ion channel family protein -
N2601_RS18540 (N2601_18540) 3860713..3861741 + 1029 WP_104821616.1 aldo/keto reductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 10960.65 Da        Isoelectric Point: 10.5026

>T257353 WP_104821614.1 NZ_CP104158:3857018-3857311 [Rhizobium tropici]
MPSVRLTQRALRDLERMRAFLRSKNAAAARKASARIIQTIQILSSQPDMGRPVEGSEQGLRELIVTFGRDGYIVLYQYIG
EDVLIAAIRHGREDGYK

Download         Length: 294 bp

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10888.04 Da        Isoelectric Point: 4.7881

>AT257353 WP_104821613.1 NZ_CP104158:3856746-3857030 [Rhizobium tropici]
MSPALKASVEIDPDVNERLEKLAASRHRHPNRLLNEAVRQYVEREEKRDSLLQDVRRSLDDYQATGLHVTGDEVIAWLET
WGDDDEKAPPECHR

Download         Length: 285 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References