257346

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pasABC/RelE-HTH
Location 370793..371273 Replicon chromosome
Accession NZ_CP104158
Organism Rhizobium tropici strain CB3060

Toxin (Protein)


Gene name pasB Uniprot ID -
Locus tag N2601_RS01815 Protein ID WP_104822116.1
Coordinates 370793..371062 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag N2601_RS01820 Protein ID WP_104822117.1
Coordinates 371046..371273 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N2601_RS01790 (N2601_01790) 366720..367769 + 1050 WP_104822111.1 aldo/keto reductase -
N2601_RS01795 (N2601_01795) 367815..368840 - 1026 WP_104822112.1 NAD(P)-dependent alcohol dehydrogenase -
N2601_RS01800 (N2601_01800) 368951..369853 + 903 WP_104822113.1 LysR family transcriptional regulator -
N2601_RS01805 (N2601_01805) 369854..370129 + 276 WP_104822114.1 LysR substrate-binding domain-containing protein -
N2601_RS01810 (N2601_01810) 370187..370735 - 549 WP_104822115.1 2'-5' RNA ligase family protein -
N2601_RS01815 (N2601_01815) 370793..371062 - 270 WP_104822116.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N2601_RS01820 (N2601_01820) 371046..371273 - 228 WP_104822117.1 DUF6290 family protein Antitoxin
N2601_RS01825 (N2601_01825) 371440..372963 + 1524 WP_104822118.1 histidine--tRNA ligase -
N2601_RS01830 (N2601_01830) 373120..374238 + 1119 WP_104822119.1 ATP phosphoribosyltransferase regulatory subunit -
N2601_RS01835 (N2601_01835) 374238..374933 + 696 WP_104822120.1 ATP phosphoribosyltransferase -
N2601_RS01840 (N2601_01840) 375014..375457 - 444 WP_104822121.1 DoxX family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-88)

Antitoxin

Relaxosome protein TraY

(7-50)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10689.30 Da        Isoelectric Point: 10.2777

>T257346 WP_104822116.1 NZ_CP104158:c371062-370793 [Rhizobium tropici]
VVWTIEYARSARKFVEKLDPKTRRRIRDFLEERLPSLHDPRQVGDALQGAKLGNYWRYRVGDYRIICDLQDSRLVVLVVE
IGNRRDIYR

Download         Length: 270 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8820.82 Da        Isoelectric Point: 4.4290

>AT257346 WP_104822117.1 NZ_CP104158:c371273-371046 [Rhizobium tropici]
MSKQTAIRLPDETYERLQALAERTGRTATYYIRQAIEAHLQDLEDVYLAERAMERIKKGEDEIVSSEEFWRGLDD

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References