257312

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 123045..123598 Replicon chromosome
Accession NZ_CP104134
Organism Sinorhizobium sp. C101

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag N0R80_RS00600 Protein ID WP_244563892.1
Coordinates 123344..123598 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag N0R80_RS00595 Protein ID WP_085026101.1
Coordinates 123045..123317 (+) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N0R80_RS00570 (N0R80_00570) 118178..118981 + 804 WP_275596280.1 sulfite exporter TauE/SafE family protein -
N0R80_RS00575 (N0R80_00575) 119236..120261 + 1026 WP_275596281.1 zincin-like metallopeptidase domain-containing protein -
N0R80_RS00580 (N0R80_00580) 120655..121024 - 370 Protein_115 helix-turn-helix domain-containing protein -
N0R80_RS00585 (N0R80_00585) 121176..122054 + 879 WP_275596282.1 SDR family oxidoreductase -
N0R80_RS00590 (N0R80_00590) 122574..122878 + 305 Protein_117 hypothetical protein -
N0R80_RS00595 (N0R80_00595) 123045..123317 + 273 WP_085026101.1 CopG family ribbon-helix-helix protein Antitoxin
N0R80_RS00600 (N0R80_00600) 123344..123598 + 255 WP_244563892.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N0R80_RS00605 (N0R80_00605) 124208..124552 + 345 Protein_120 hypothetical protein -
N0R80_RS00610 (N0R80_00610) 124881..125492 + 612 WP_275596283.1 tyrosine-type recombinase/integrase -
N0R80_RS00615 (N0R80_00615) 125587..125679 + 93 Protein_122 antirestriction protein ArdC -
N0R80_RS00620 (N0R80_00620) 125712..125945 - 234 WP_275599812.1 hypothetical protein -
N0R80_RS00625 (N0R80_00625) 126333..126644 + 312 WP_085026105.1 DUF736 domain-containing protein -
N0R80_RS00630 (N0R80_00630) 126940..127065 - 126 WP_275531997.1 hypothetical protein -
N0R80_RS00635 (N0R80_00635) 127408..127542 + 135 WP_275596284.1 hypothetical protein -
N0R80_RS00640 (N0R80_00640) 127640..127897 - 258 WP_275596385.1 WGR domain-containing protein -
N0R80_RS00645 (N0R80_00645) 128102..128539 - 438 Protein_128 thermonuclease family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-82)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-40)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 9503.79 Da        Isoelectric Point: 6.7167

>T257312 WP_244563892.1 NZ_CP104134:123344-123598 [Sinorhizobium sp. C101]
MERCRRFLATKAPEAARRAGQAIERQFLLLETAPDIGRPFSEAPELRELVIAFGDSGYVALYHHQPADDAVYVLAFRHQK
EAGY

Download         Length: 255 bp

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10571.87 Da        Isoelectric Point: 6.7205

>AT257312 WP_085026101.1 NZ_CP104134:123045-123317 [Sinorhizobium sp. C101]
MATSLKIDDTLKSRVQQLASQRRRSPHWIMLEAIQQYVEREEARESFKQEALASWAAYKETGRHLTGEEVRTWLTTWGTD
DEKPVPECHK

Download         Length: 273 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References