Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 123045..123598 Replicon chromosome
Accession NZ_CP104134
Organism Sinorhizobium sp. C101

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag N0R80_RS00600 Protein ID WP_244563892.1
Coordinates 123344..123598 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag N0R80_RS00595 Protein ID WP_085026101.1
Coordinates 123045..123317 (+) Length 91 a.a.

Genomic Context

N0R80_RS00570N0R80_RS00575N0R80_RS00585N0R80_RS00590N0R80_RS00595N0R80_RS00600N0R80_RS00605N0R80_RS00610N0R80_RS00615N0R80_RS00625N0R80_RS00635N0R80_RS00580N0R80_RS00620N0R80_RS00630N0R80_RS00640N0R80_RS00645
Location: 118178..118981 (804 bp)
Type: Others
Protein ID: WP_275596280.1
Location: 119236..120261 (1026 bp)
Type: Others
Protein ID: WP_275596281.1
Location: 121176..122054 (879 bp)
Type: Others
Protein ID: WP_275596282.1
Location: 122574..122878 (305 bp)
Type: Others
Protein ID: Protein_117
Location: 123045..123317 (273 bp)
Type: Antitoxin
Protein ID: WP_085026101.1
Location: 123344..123598 (255 bp)
Type: Toxin
Protein ID: WP_244563892.1
Location: 124208..124552 (345 bp)
Type: Others
Protein ID: Protein_120
Location: 124881..125492 (612 bp)
Type: Others
Protein ID: WP_275596283.1
Location: 125587..125679 (93 bp)
Type: Others
Protein ID: Protein_122
Location: 126333..126644 (312 bp)
Type: Others
Protein ID: WP_085026105.1
Location: 127408..127542 (135 bp)
Type: Others
Protein ID: WP_275596284.1
Location: 120655..121024 (370 bp)
Type: Others
Protein ID: Protein_115
Location: 125712..125945 (234 bp)
Type: Others
Protein ID: WP_275599812.1
Location: 126940..127065 (126 bp)
Type: Others
Protein ID: WP_275531997.1
Location: 127640..127897 (258 bp)
Type: Others
Protein ID: WP_275596385.1
Location: 128102..128539 (438 bp)
Type: Others
Protein ID: Protein_128
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
N0R80_RS00570 (N0R80_00570)118178..118981+804WP_275596280.1sulfite exporter TauE/SafE family protein-
N0R80_RS00575 (N0R80_00575)119236..120261+1026WP_275596281.1zincin-like metallopeptidase domain-containing protein-
N0R80_RS00580 (N0R80_00580)120655..121024-370Protein_115helix-turn-helix domain-containing protein-
N0R80_RS00585 (N0R80_00585)121176..122054+879WP_275596282.1SDR family oxidoreductase-
N0R80_RS00590 (N0R80_00590)122574..122878+305Protein_117hypothetical protein-
N0R80_RS00595 (N0R80_00595)123045..123317+273WP_085026101.1CopG family ribbon-helix-helix proteinAntitoxin
N0R80_RS00600 (N0R80_00600)123344..123598+255WP_244563892.1type II toxin-antitoxin system RelE/ParE family toxinToxin
N0R80_RS00605 (N0R80_00605)124208..124552+345Protein_120hypothetical protein-
N0R80_RS00610 (N0R80_00610)124881..125492+612WP_275596283.1tyrosine-type recombinase/integrase-
N0R80_RS00615 (N0R80_00615)125587..125679+93Protein_122antirestriction protein ArdC-
N0R80_RS00620 (N0R80_00620)125712..125945-234WP_275599812.1hypothetical protein-
N0R80_RS00625 (N0R80_00625)126333..126644+312WP_085026105.1DUF736 domain-containing protein-
N0R80_RS00630 (N0R80_00630)126940..127065-126WP_275531997.1hypothetical protein-
N0R80_RS00635 (N0R80_00635)127408..127542+135WP_275596284.1hypothetical protein-
N0R80_RS00640 (N0R80_00640)127640..127897-258WP_275596385.1WGR domain-containing protein-
N0R80_RS00645 (N0R80_00645)128102..128539-438Protein_128thermonuclease family protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-82)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-40)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 9503.79 Da        Isoelectric Point: 6.7167

>T257312 WP_244563892.1 NZ_CP104134:123344-123598 [Sinorhizobium sp. C101]
MERCRRFLATKAPEAARRAGQAIERQFLLLETAPDIGRPFSEAPELRELVIAFGDSGYVALYHHQPADDAVYVLAFRHQK
EAGY

Download         Length: 255 bp

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10571.87 Da        Isoelectric Point: 6.7205

>AT257312 WP_085026101.1 NZ_CP104134:123045-123317 [Sinorhizobium sp. C101]
MATSLKIDDTLKSRVQQLASQRRRSPHWIMLEAIQQYVEREEARESFKQEALASWAAYKETGRHLTGEEVRTWLTTWGTD
DEKPVPECHK

Download         Length: 273 bp


Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References