Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2115327..2115598 | Replicon | chromosome |
| Accession | NZ_CP104123 | ||
| Organism | Escherichia coli strain USDA-ARS-USMARC-49610 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2115457..2115560 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2115327..2115598 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1705_RS10165 | 2111882..2112544 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N1705_RS10170 | 2112568..2113224 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N1705_RS10175 | 2113326..2113556 | - | 231 | WP_000916760.1 | DNA polymerase III subunit theta | - |
| N1705_RS10180 | 2113695..2114069 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| N1705_RS10185 | 2114073..2114945 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| N1705_RS10190 | 2114958..2115299 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2115327..2115598 | - | 272 | - | - | Antitoxin |
| - | 2115457..2115560 | + | 104 | - | - | Toxin |
| N1705_RS10195 | 2115695..2116351 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| N1705_RS10200 | 2116352..2116543 | - | 192 | WP_000457842.1 | YebW family protein | - |
| N1705_RS10205 | 2116648..2116884 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N1705_RS10210 | 2117002..2118441 | - | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257272 NZ_CP104123:2115457-2115560 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT257272 NZ_CP104123:c2115598-2115327 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
