Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2864697..2864847 | Replicon | chromosome |
| Accession | NC_016514 | ||
| Organism | Enterobacter cloacae EcWSU1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2864709..2864812 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2864697..2864847 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECWSU1_RS13690 | 2860548..2860787 | + | 240 | WP_020883412.1 | YebV family protein | - |
| ECWSU1_RS13695 | 2860822..2861466 | - | 645 | WP_041162735.1 | protein-serine/threonine phosphatase | - |
| ECWSU1_RS13700 | 2861634..2862575 | + | 942 | WP_014170619.1 | VirK/YbjX family protein | - |
| ECWSU1_RS13705 | 2863127..2863385 | + | 259 | Protein_2710 | XRE family transcriptional regulator | - |
| ECWSU1_RS13710 | 2863396..2864262 | + | 867 | WP_041162981.1 | benzoate transporter | - |
| - | 2864697..2864847 | + | 151 | - | - | Antitoxin |
| - | 2864709..2864812 | - | 104 | - | - | Toxin |
| ECWSU1_RS13715 | 2864951..2865289 | - | 339 | WP_014170622.1 | YebY family protein | - |
| ECWSU1_RS13720 | 2865306..2866175 | - | 870 | WP_014170623.1 | copper homeostasis membrane protein CopD | - |
| ECWSU1_RS13725 | 2866177..2866548 | - | 372 | WP_041162736.1 | CopC domain-containing protein YobA | - |
| ECWSU1_RS13730 | 2866686..2866916 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| ECWSU1_RS13735 | 2867026..2867676 | + | 651 | WP_014170625.1 | carbon-nitrogen hydrolase family protein | - |
| ECWSU1_RS13740 | 2867701..2868363 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T25724 NC_016514:c2864812-2864709 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT25724 NC_016514:2864697-2864847 [Enterobacter ludwigii]
TTTGTAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TTTGTAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
