Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2559095..2559366 | Replicon | chromosome |
| Accession | NZ_CP104112 | ||
| Organism | Escherichia coli strain USDA-ARS-USMARC-51688 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2559133..2559236 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2559095..2559366 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1707_RS12545 | 2556252..2557691 | + | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N1707_RS12550 | 2557809..2558045 | + | 237 | WP_001338166.1 | YebV family protein | - |
| N1707_RS12555 | 2558150..2558341 | + | 192 | WP_001338167.1 | YebW family protein | - |
| N1707_RS12560 | 2558342..2558998 | - | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| - | 2559095..2559366 | + | 272 | - | - | Antitoxin |
| - | 2559133..2559236 | - | 104 | - | - | Toxin |
| N1707_RS12565 | 2559394..2559735 | - | 342 | WP_000976472.1 | YebY family protein | - |
| N1707_RS12570 | 2559748..2560620 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| N1707_RS12575 | 2560624..2560998 | - | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| N1707_RS12580 | 2561137..2561367 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N1707_RS12585 | 2561469..2562125 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N1707_RS12590 | 2562149..2562811 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257206 NZ_CP104112:c2559236-2559133 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT257206 NZ_CP104112:2559095-2559366 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
