Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1929306..1929451 | Replicon | chromosome |
| Accession | NZ_CP104110 | ||
| Organism | Klebsiella pneumoniae strain USDA-ARS-USMARC-52099 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1929342..1929444 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1929306..1929451 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1708_RS09220 | 1924436..1926496 | + | 2061 | WP_218790307.1 | oligopeptidase B | - |
| N1708_RS09225 | 1926500..1927159 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| N1708_RS09230 | 1927238..1927468 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| N1708_RS09235 | 1927581..1927955 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| N1708_RS09240 | 1927959..1928828 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| N1708_RS09245 | 1928845..1929183 | + | 339 | WP_075647430.1 | YebY family protein | - |
| - | 1929306..1929451 | - | 146 | - | - | Antitoxin |
| - | 1929342..1929444 | + | 103 | - | - | Toxin |
| N1708_RS09250 | 1929820..1929963 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| N1708_RS09255 | 1930068..1931036 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| N1708_RS09260 | 1931193..1931846 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| N1708_RS09265 | 1931843..1932034 | - | 192 | WP_002911395.1 | YebW family protein | - |
| N1708_RS09270 | 1932132..1932371 | - | 240 | WP_002911393.1 | YebV family protein | - |
| N1708_RS09275 | 1932487..1933920 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T257182 NZ_CP104110:1929342-1929444 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT257182 NZ_CP104110:c1929451-1929306 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
