Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1720412..1720580 | Replicon | chromosome |
| Accession | NZ_CP104108 | ||
| Organism | Cronobacter sakazakii strain USDA-ARS-USMARC-54664 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1720474..1720577 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1720412..1720580 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1710_RS08095 (N1710_08095) | 1715563..1717626 | + | 2064 | WP_069681986.1 | oligopeptidase B | - |
| N1710_RS08100 (N1710_08100) | 1717623..1718285 | - | 663 | WP_007775901.1 | exodeoxyribonuclease X | - |
| N1710_RS08105 (N1710_08105) | 1718357..1718587 | - | 231 | WP_007698883.1 | DNA polymerase III subunit theta | - |
| N1710_RS08110 (N1710_08110) | 1718734..1719108 | + | 375 | WP_105546031.1 | CopC domain-containing protein YobA | - |
| N1710_RS08115 (N1710_08115) | 1719113..1719982 | + | 870 | WP_104658195.1 | copper homeostasis membrane protein CopD | - |
| N1710_RS08120 (N1710_08120) | 1719997..1720335 | + | 339 | WP_004386669.1 | YebY family protein | - |
| - | 1720412..1720580 | - | 169 | - | - | Antitoxin |
| - | 1720474..1720577 | + | 104 | - | - | Toxin |
| N1710_RS08125 (N1710_08125) | 1720803..1721363 | + | 561 | WP_032968251.1 | hypothetical protein | - |
| N1710_RS08130 (N1710_08130) | 1721317..1721652 | + | 336 | WP_004386671.1 | hypothetical protein | - |
| N1710_RS08135 (N1710_08135) | 1721998..1722090 | + | 93 | WP_012124476.1 | hypothetical protein | - |
| N1710_RS08140 (N1710_08140) | 1722448..1723092 | + | 645 | WP_105504638.1 | metallophosphoesterase | - |
| N1710_RS08145 (N1710_08145) | 1723093..1723284 | - | 192 | WP_004386675.1 | YebW family protein | - |
| N1710_RS08150 (N1710_08150) | 1723409..1723648 | - | 240 | WP_004386676.1 | YebV family protein | - |
| N1710_RS08155 (N1710_08155) | 1723761..1725203 | - | 1443 | WP_104671842.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T257173 NZ_CP104108:1720474-1720577 [Cronobacter sakazakii]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT257173 NZ_CP104108:c1720580-1720412 [Cronobacter sakazakii]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
