Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2624319..2624590 | Replicon | chromosome |
| Accession | NZ_CP104077 | ||
| Organism | Escherichia coli strain HB42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2624357..2624459 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2624319..2624590 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0M81_RS12435 | 2621476..2622915 | + | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N0M81_RS12440 | 2623033..2623269 | + | 237 | WP_001295499.1 | YebV family protein | - |
| N0M81_RS12445 | 2623374..2623565 | + | 192 | WP_001296140.1 | YebW family protein | - |
| N0M81_RS12450 | 2623566..2624222 | - | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| - | 2624319..2624590 | + | 272 | - | - | Antitoxin |
| - | 2624357..2624459 | - | 103 | - | - | Toxin |
| N0M81_RS12455 | 2624618..2624959 | - | 342 | WP_000976484.1 | YebY family protein | - |
| N0M81_RS12460 | 2624972..2625844 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| N0M81_RS12465 | 2625848..2626222 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| N0M81_RS12470 | 2626361..2626591 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N0M81_RS12475 | 2626693..2627349 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N0M81_RS12480 | 2627373..2628035 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T257122 NZ_CP104077:c2624459-2624357 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT257122 NZ_CP104077:2624319-2624590 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
