257088

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3469883..3470352 Replicon chromosome
Accession NZ_CP104045
Organism Pseudomonas sp. FJ2-5-13

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag N2A98_RS15010 Protein ID WP_044273978.1
Coordinates 3469883..3470158 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A1T1I1G5
Locus tag N2A98_RS15015 Protein ID WP_044273976.1
Coordinates 3470158..3470352 (-) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N2A98_RS14990 (N2A98_15010) 3464885..3466129 - 1245 WP_137204451.1 zinc-dependent alcohol dehydrogenase -
N2A98_RS14995 (N2A98_15015) 3466214..3467332 - 1119 WP_275623613.1 carboxylate-amine ligase -
N2A98_RS15000 (N2A98_15020) 3467339..3468283 - 945 WP_047711124.1 class I SAM-dependent methyltransferase -
N2A98_RS15005 (N2A98_15025) 3468295..3469674 - 1380 WP_275622229.1 iron-containing redox enzyme family protein -
N2A98_RS15010 (N2A98_15030) 3469883..3470158 - 276 WP_044273978.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N2A98_RS15015 (N2A98_15035) 3470158..3470352 - 195 WP_044273976.1 hypothetical protein Antitoxin
N2A98_RS15020 (N2A98_15040) 3470500..3472242 - 1743 WP_003192009.1 ABC transporter substrate-binding protein -
N2A98_RS15025 (N2A98_15045) 3472401..3472673 - 273 WP_014718862.1 DUF2160 domain-containing protein -
N2A98_RS15030 (N2A98_15050) 3472685..3473485 - 801 WP_044273973.1 carbohydrate ABC transporter permease -
N2A98_RS15035 (N2A98_15055) 3473496..3474362 - 867 WP_005789024.1 sugar ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10303.91 Da        Isoelectric Point: 6.2166

>T257088 WP_044273978.1 NZ_CP104045:c3470158-3469883 [Pseudomonas sp. FJ2-5-13]
MLSVVWLDEAISDLIDIVTFIAAENPGAARRIKTRLEGAPLPLTEHPYLYPNGRVPGTREVVVHPNYVLVYRVTAERIEI
VNVLHARQEYP

Download         Length: 276 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7112.11 Da        Isoelectric Point: 5.0509

>AT257088 WP_044273976.1 NZ_CP104045:c3470352-3470158 [Pseudomonas sp. FJ2-5-13]
MGVPLSPIVSEFETEEQASSHDLWFRAKVEKSLANPGPGVPHDEVMARVEAIILEAERKQRVKA

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A1T1I1G5

References