Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 970173..970714 Replicon chromosome
Accession NZ_CP104045
Organism Pseudomonas sp. FJ2-5-13

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag N2A98_RS04285 Protein ID WP_200888182.1
Coordinates 970439..970714 (+) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A921NKV7
Locus tag N2A98_RS04280 Protein ID WP_032893597.1
Coordinates 970173..970439 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N2A98_RS04265 (N2A98_04265) 966082..968382 - 2301 WP_069557486.1 TonB-dependent siderophore receptor -
N2A98_RS04270 (N2A98_04270) 968588..969268 + 681 WP_275623067.1 Fe2+-dependent dioxygenase -
N2A98_RS04275 (N2A98_04275) 969271..970029 + 759 WP_275623068.1 tetratricopeptide repeat protein -
N2A98_RS04280 (N2A98_04280) 970173..970439 + 267 WP_032893597.1 ribbon-helix-helix domain-containing protein Antitoxin
N2A98_RS04285 (N2A98_04285) 970439..970714 + 276 WP_200888182.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N2A98_RS04290 (N2A98_04290) 970781..971944 - 1164 WP_014716890.1 type III PLP-dependent enzyme -
N2A98_RS04295 (N2A98_04295) 972399..973556 - 1158 WP_275623069.1 ABC transporter ATP-binding protein -
N2A98_RS04300 (N2A98_04300) 973553..974206 - 654 WP_003188473.1 ABC transporter permease -
N2A98_RS04305 (N2A98_04305) 974219..975112 - 894 WP_044271547.1 glycine betaine ABC transporter substrate-binding protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(9-45)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10903.44 Da        Isoelectric Point: 7.2026

>T257086 WP_200888182.1 NZ_CP104045:970439-970714 [Pseudomonas sp. FJ2-5-13]
MELRWTSKALSDLTRLYDFLSVVNREAAARIVQSLSQAPDTLLDNPRIGERIEEFSPRDVRRLLVGHYEMRYEIQQSTLY
ILRLWHVREDR

Download         Length: 276 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9728.00 Da        Isoelectric Point: 4.7640

>AT257086 WP_032893597.1 NZ_CP104045:970173-970439 [Pseudomonas sp. FJ2-5-13]
MGAETKVMTAHIPTALAQKVDQMAARMDRSRGWVVKQALADWVDQEEERSRLTLEAMADVDAGRVIDHQAVQAWADSLST
DSPLPVPR

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References