Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2799924..2800068 | Replicon | chromosome |
| Accession | NZ_CP104014 | ||
| Organism | Enterobacter sp. CP102 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2799929..2800033 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2799924..2800068 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N1249_RS13255 (N1249_13255) | 2796098..2797540 | + | 1443 | WP_257273343.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| N1249_RS13260 (N1249_13260) | 2797646..2797885 | + | 240 | WP_014070670.1 | YebV family protein | - |
| N1249_RS13265 (N1249_13265) | 2797924..2798568 | - | 645 | WP_259829960.1 | protein-serine/threonine phosphatase | - |
| N1249_RS13270 (N1249_13270) | 2798748..2799689 | + | 942 | WP_014070672.1 | VirK/YbjX family protein | - |
| - | 2799924..2800068 | + | 145 | - | - | Antitoxin |
| - | 2799929..2800033 | - | 105 | - | - | Toxin |
| N1249_RS13275 (N1249_13275) | 2800173..2800511 | - | 339 | WP_014070673.1 | YebY family protein | - |
| N1249_RS13280 (N1249_13280) | 2800526..2801395 | - | 870 | WP_257273346.1 | copper homeostasis membrane protein CopD | - |
| N1249_RS13285 (N1249_13285) | 2801397..2801771 | - | 375 | WP_259829970.1 | CopC domain-containing protein YobA | - |
| N1249_RS13290 (N1249_13290) | 2801909..2802139 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| N1249_RS13295 (N1249_13295) | 2802249..2802899 | + | 651 | WP_259829972.1 | carbon-nitrogen hydrolase family protein | - |
| N1249_RS13300 (N1249_13300) | 2802924..2803586 | + | 663 | WP_257273349.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T257004 NZ_CP104014:c2800033-2799929 [Enterobacter sp. CP102]
GGCAAGGCGATTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT257004 NZ_CP104014:2799924-2800068 [Enterobacter sp. CP102]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAAATCGCCTTGCCTTTTAAGAATAGATGAGAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAAATCGCCTTGCCTTTTAAGAATAGATGAGAGCGCCAGGTTTTCCAGT
