Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vagCD/VapC-VagC
Location 3116898..3117584 Replicon chromosome
Accession NZ_CP104011
Organism Pseudomonas sp. GCEP-101 isolate Gut

Toxin (Protein)


Gene name vagD Uniprot ID -
Locus tag N0B71_RS14270 Protein ID WP_259753222.1
Coordinates 3116898..3117311 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID -
Locus tag N0B71_RS14275 Protein ID WP_259753223.1
Coordinates 3117336..3117584 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N0B71_RS14265 3114827..3116854 + 2028 WP_259759463.1 exodeoxyribonuclease V subunit alpha -
N0B71_RS14270 3116898..3117311 - 414 WP_259753222.1 type II toxin-antitoxin system VapC family toxin Toxin
N0B71_RS14275 3117336..3117584 - 249 WP_259753223.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
N0B71_RS14280 3117754..3120600 + 2847 WP_259753224.1 ATP-binding protein -
N0B71_RS14285 3120579..3121775 + 1197 WP_259753225.1 EAL domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-124)

Antitoxin

SpoVT-AbrB domain

(9-44)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 14917.07 Da        Isoelectric Point: 5.6864

>T256996 WP_259753222.1 NZ_CP104011:c3117311-3116898 [Pseudomonas sp. GCEP-101]
MLDTNICSLIMRKNPPQVLQRLQHAAEAGNRLVISAITYAELRYGAASPKAPRAVTAWIDALVQRLDDVLPWDSDAVDAS
AKLMRQLLDAGTPIGPNDTGIAGHALATQCIVVTNNTREFRRVPGLLVEDWCSDQPT

Download         Length: 414 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9250.41 Da        Isoelectric Point: 4.2342

>AT256996 WP_259753223.1 NZ_CP104011:c3117584-3117336 [Pseudomonas sp. GCEP-101]
MPTTTVSLFRNGKNQAVRIPRDMEFKGVTELVMTREGDTLTLRPARPTWSSLADLEPIDADILSDRPTMIEPGRVDFSDD
EE

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References