Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbE-relB/ParE-YafN
Location 1977921..1978440 Replicon chromosome
Accession NZ_CP104011
Organism Pseudomonas sp. GCEP-101 isolate Gut

Toxin (Protein)


Gene name stbE Uniprot ID -
Locus tag N0B71_RS08910 Protein ID WP_259758401.1
Coordinates 1977921..1978205 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag N0B71_RS08915 Protein ID WP_259758403.1
Coordinates 1978195..1978440 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N0B71_RS08890 1973657..1973788 + 132 WP_259758396.1 hypothetical protein -
N0B71_RS08895 1973852..1974568 - 717 WP_259758397.1 carbonic anhydrase -
N0B71_RS08900 1974860..1975918 - 1059 WP_259758399.1 PA0069 family radical SAM protein -
N0B71_RS08905 1976106..1977728 - 1623 WP_259758400.1 inorganic phosphate transporter -
N0B71_RS08910 1977921..1978205 - 285 WP_259758401.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N0B71_RS08915 1978195..1978440 - 246 WP_259758403.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
N0B71_RS08920 1978561..1978830 - 270 WP_259758404.1 YheV family putative zinc ribbon protein -
N0B71_RS08925 1978830..1980875 - 2046 WP_259758405.1 oligopeptidase A -
N0B71_RS08930 1980952..1981494 + 543 WP_259758406.1 gamma carbonic anhydrase family protein -
N0B71_RS08935 1981782..1982918 + 1137 WP_259758407.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-81)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-76)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11005.70 Da        Isoelectric Point: 10.1538

>T256995 WP_259758401.1 NZ_CP104011:c1978205-1977921 [Pseudomonas sp. GCEP-101]
MTYELEFLPAALKEWRKLGHTVREQFKRKLAERLEEPRVPADALHGLADHYKIKLRSAGYRLVYRVEDERVVIAVVAVGK
RERGEVYSAAQDRR

Download         Length: 285 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8705.01 Da        Isoelectric Point: 4.2837

>AT256995 WP_259758403.1 NZ_CP104011:c1978440-1978195 [Pseudomonas sp. GCEP-101]
MQNLLASTAVSVSELKKNPSAVLAESGGEPVAVLNHNKVMGYMVPAELFESILERLEDLELAEIARSRLGEKGIPVSLDD
L

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References