Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2175334..2175605 | Replicon | chromosome |
| Accession | NZ_CP103974 | ||
| Organism | Escherichia coli strain DLI.6n | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2175464..2175567 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2175334..2175605 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NZ657_RS10490 | 2171889..2172551 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NZ657_RS10495 | 2172575..2173231 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NZ657_RS10500 | 2173333..2173563 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NZ657_RS10505 | 2173702..2174076 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NZ657_RS10510 | 2174080..2174952 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| NZ657_RS10515 | 2174965..2175306 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2175334..2175605 | - | 272 | - | - | Antitoxin |
| - | 2175464..2175567 | + | 104 | - | - | Toxin |
| NZ657_RS10520 | 2175702..2176358 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| NZ657_RS10525 | 2176359..2176550 | - | 192 | WP_000457842.1 | YebW family protein | - |
| NZ657_RS10530 | 2176655..2176891 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NZ657_RS10535 | 2177009..2178448 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T256943 NZ_CP103974:2175464-2175567 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT256943 NZ_CP103974:c2175605-2175334 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
