Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5284404..5284675 | Replicon | chromosome |
| Accession | NZ_CP103864 | ||
| Organism | Escherichia coli O157:H7 strain RV06 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5284442..5284545 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5284404..5284675 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NUE47_RS26180 | 5281561..5283000 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NUE47_RS26185 | 5283118..5283354 | + | 237 | WP_001295499.1 | YebV family protein | - |
| NUE47_RS26190 | 5283459..5283650 | + | 192 | WP_001296140.1 | YebW family protein | - |
| NUE47_RS26195 | 5283651..5284307 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 5284404..5284675 | + | 272 | - | - | Antitoxin |
| - | 5284442..5284545 | - | 104 | - | - | Toxin |
| NUE47_RS26200 | 5284703..5285044 | - | 342 | WP_000976483.1 | YebY family protein | - |
| NUE47_RS26205 | 5285057..5285929 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| NUE47_RS26210 | 5285933..5286307 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| NUE47_RS26215 | 5286446..5286676 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NUE47_RS26220 | 5286778..5287434 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NUE47_RS26225 | 5287458..5288120 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T256865 NZ_CP103864:c5284545-5284442 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT256865 NZ_CP103864:5284404-5284675 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
