Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2597553..2597696 | Replicon | chromosome |
| Accession | NZ_CP103771 | ||
| Organism | Salmonella enterica strain S1905 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2597555..2597658 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2597553..2597696 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYS49_RS12565 | 2592985..2593254 | + | 270 | WP_077908593.1 | hypothetical protein | - |
| NYS49_RS12570 | 2593420..2593560 | + | 141 | WP_001576018.1 | hypothetical protein | - |
| NYS49_RS12575 | 2593706..2594247 | - | 542 | Protein_2455 | transposase | - |
| NYS49_RS12580 | 2594267..2594359 | - | 93 | WP_231923105.1 | hypothetical protein | - |
| NYS49_RS12585 | 2594389..2596809 | - | 2421 | WP_024149295.1 | type III secretion system effector SspH3 | - |
| NYS49_RS12590 | 2596982..2597065 | - | 84 | Protein_2458 | phage tail protein | - |
| NYS49_RS12595 | 2597077..2597424 | + | 348 | Protein_2459 | tyrosine-type recombinase/integrase | - |
| - | 2597553..2597696 | + | 144 | - | - | Antitoxin |
| - | 2597555..2597658 | - | 104 | - | - | Toxin |
| NYS49_RS12600 | 2597798..2598151 | - | 354 | WP_000722368.1 | YebY family protein | - |
| NYS49_RS12605 | 2598168..2599043 | - | 876 | WP_023137953.1 | copper homeostasis membrane protein CopD | - |
| NYS49_RS12610 | 2599044..2599418 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| NYS49_RS12615 | 2599556..2599786 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| NYS49_RS12620 | 2599894..2600550 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| NYS49_RS12625 | 2600574..2601272 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T256626 NZ_CP103771:c2597658-2597555 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT256626 NZ_CP103771:2597553-2597696 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
