Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | shpAB/BrnT-BrnA |
Location | 554273..554849 | Replicon | chromosome |
Accession | NZ_CP103771 | ||
Organism | Salmonella enterica strain S1905 |
Toxin (Protein)
Gene name | shpA | Uniprot ID | M7RG88 |
Locus tag | NYS49_RS02640 | Protein ID | WP_001131963.1 |
Coordinates | 554273..554560 (+) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | shpB | Uniprot ID | A0A6C6ZAR7 |
Locus tag | NYS49_RS02645 | Protein ID | WP_000063143.1 |
Coordinates | 554547..554849 (+) | Length | 101 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NYS49_RS02630 (549383) | 549383..552892 | - | 3510 | WP_023138516.1 | type I restriction-modification system endonuclease | - |
NYS49_RS02635 (553090) | 553090..554004 | + | 915 | WP_023138517.1 | restriction endonuclease | - |
NYS49_RS02640 (554273) | 554273..554560 | + | 288 | WP_001131963.1 | BrnT family toxin | Toxin |
NYS49_RS02645 (554547) | 554547..554849 | + | 303 | WP_000063143.1 | BrnA antitoxin family protein | Antitoxin |
NYS49_RS02650 (554924) | 554924..555880 | - | 957 | WP_000187840.1 | GTPase | - |
NYS49_RS02655 (555891) | 555891..556094 | - | 204 | WP_000460616.1 | YbdD/YjiX family protein | - |
NYS49_RS02660 (556189) | 556189..558339 | - | 2151 | WP_000379928.1 | pyruvate/proton symporter BtsT | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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