Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | spoIISABC/SpoIISA-SpoIISB |
| Location | 1455079..1455995 | Replicon | chromosome |
| Accession | NC_016047 | ||
| Organism | Bacillus subtilis subsp. spizizenii TU-B-10 | ||
Toxin (Protein)
| Gene name | spoIISA | Uniprot ID | G4NV08 |
| Locus tag | GYO_RS29290 | Protein ID | WP_014113499.1 |
| Coordinates | 1455249..1455995 (-) | Length | 249 a.a. |
Antitoxin (Protein)
| Gene name | spoIISB | Uniprot ID | G4NV07 |
| Locus tag | GYO_RS29285 | Protein ID | WP_003239095.1 |
| Coordinates | 1455079..1455249 (-) | Length | 57 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYO_RS29255 | 1451943..1452269 | + | 327 | WP_014113492.1 | XkdW family protein | - |
| GYO_RS29260 | 1452266..1452430 | + | 165 | WP_014113493.1 | XkdX family protein | - |
| GYO_RS29265 | 1452475..1453314 | + | 840 | WP_014113494.1 | hypothetical protein | - |
| GYO_RS29270 | 1453367..1453636 | + | 270 | WP_014113495.1 | hemolysin XhlA family protein | - |
| GYO_RS29275 | 1453649..1453912 | + | 264 | WP_014113496.1 | phage holin | - |
| GYO_RS29280 | 1453925..1454818 | + | 894 | WP_014113497.1 | N-acetylmuramoyl-L-alanine amidase | - |
| GYO_RS43690 | 1454856..1454993 | - | 138 | WP_136654612.1 | three component toxin-antitoxin-antitoxin system antitoxin SpoIISC | - |
| GYO_RS29285 | 1455079..1455249 | - | 171 | WP_003239095.1 | three component toxin-antitoxin-antitoxin system antitoxin SpoIISB | Antitoxin |
| GYO_RS29290 | 1455249..1455995 | - | 747 | WP_014113499.1 | toxin-antitoxin-antitoxin system toxin SpoIISA | Toxin |
| GYO_RS29295 | 1456105..1457106 | - | 1002 | WP_014113500.1 | inorganic phosphate transporter | - |
| GYO_RS29300 | 1457119..1457736 | - | 618 | WP_014113501.1 | DUF47 domain-containing protein | - |
| GYO_RS29305 | 1458013..1459329 | - | 1317 | WP_014113502.1 | serine/threonine exchanger | - |
| GYO_RS29310 | 1459714..1460664 | + | 951 | WP_014113503.1 | ring-cleaving dioxygenase | - |
| GYO_RS43695 | 1460765..1460911 | + | 147 | WP_120698821.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 249 a.a. Molecular weight: 29046.41 Da Isoelectric Point: 4.6191
>T25659 WP_014113499.1 NC_016047:c1455995-1455249 [Bacillus subtilis subsp. spizizenii TU-B-10]
MLLFFQIMVWCIMGGLGLYVYATWRFESKVKEKMSAIRKTWYLLFVLGAMVYWTYDSSSLFTHWERYLIVAVSFALIDAF
IFLSAYVKKLAGSELETDTREILEENNEMLHMYLNRLKTYQYLLKNEPIHVYYGSIEAYAEGIDKLLKTYADKMNLTASL
CHYSTQADKDRLTEHMDDPADVQTRLDRKDVYYDQYGKVVLTPFTIETQSYVIKLTSDSIVTEFDYLLFTSLTSIYDLVL
PIEEEGEG
MLLFFQIMVWCIMGGLGLYVYATWRFESKVKEKMSAIRKTWYLLFVLGAMVYWTYDSSSLFTHWERYLIVAVSFALIDAF
IFLSAYVKKLAGSELETDTREILEENNEMLHMYLNRLKTYQYLLKNEPIHVYYGSIEAYAEGIDKLLKTYADKMNLTASL
CHYSTQADKDRLTEHMDDPADVQTRLDRKDVYYDQYGKVVLTPFTIETQSYVIKLTSDSIVTEFDYLLFTSLTSIYDLVL
PIEEEGEG
Download Length: 747 bp
>T25659 NC_016047:c1455995-1455249 [Bacillus subtilis subsp. spizizenii TU-B-10]
ATGCTTTTATTCTTTCAGATCATGGTCTGGTGCATCATGGGCGGATTGGGCTTATACGTGTATGCCACGTGGCGTTTCGA
ATCGAAGGTCAAAGAAAAAATGTCCGCCATCCGGAAAACATGGTATTTGCTGTTTGTTCTGGGCGCTATGGTATACTGGA
CATATGATTCCTCTTCCCTGTTTACTCACTGGGAACGGTATCTCATTGTCGCCGTCAGTTTTGCTTTAATTGACGCTTTC
ATCTTCTTAAGCGCATACGTCAAAAAACTGGCCGGCAGCGAACTCGAAACAGACACAAGAGAAATCCTCGAAGAAAACAA
CGAAATGCTCCACATGTATCTCAATCGGCTGAAAACATACCAATACCTATTGAAAAACGAACCGATCCACGTTTATTATG
GAAGTATAGAAGCATATGCTGAAGGTATTGATAAACTGCTGAAAACCTATGCCGATAAAATGAACTTAACGGCCTCCCTT
TGTCACTATTCGACACAGGCTGATAAAGACCGGTTAACCGAGCATATGGACGATCCGGCTGACGTGCAAACTCGGCTTGA
TCGAAAGGATGTTTATTACGACCAATACGGAAAAGTGGTTCTCACCCCTTTTACCATCGAGACACAGAGTTACGTCATCA
AGCTGACGTCTGACAGCATTGTCACGGAATTTGATTATTTGCTTTTCACATCATTAACAAGCATATATGATTTAGTGCTG
CCAATTGAGGAGGAAGGTGAAGGATAA
ATGCTTTTATTCTTTCAGATCATGGTCTGGTGCATCATGGGCGGATTGGGCTTATACGTGTATGCCACGTGGCGTTTCGA
ATCGAAGGTCAAAGAAAAAATGTCCGCCATCCGGAAAACATGGTATTTGCTGTTTGTTCTGGGCGCTATGGTATACTGGA
CATATGATTCCTCTTCCCTGTTTACTCACTGGGAACGGTATCTCATTGTCGCCGTCAGTTTTGCTTTAATTGACGCTTTC
ATCTTCTTAAGCGCATACGTCAAAAAACTGGCCGGCAGCGAACTCGAAACAGACACAAGAGAAATCCTCGAAGAAAACAA
CGAAATGCTCCACATGTATCTCAATCGGCTGAAAACATACCAATACCTATTGAAAAACGAACCGATCCACGTTTATTATG
GAAGTATAGAAGCATATGCTGAAGGTATTGATAAACTGCTGAAAACCTATGCCGATAAAATGAACTTAACGGCCTCCCTT
TGTCACTATTCGACACAGGCTGATAAAGACCGGTTAACCGAGCATATGGACGATCCGGCTGACGTGCAAACTCGGCTTGA
TCGAAAGGATGTTTATTACGACCAATACGGAAAAGTGGTTCTCACCCCTTTTACCATCGAGACACAGAGTTACGTCATCA
AGCTGACGTCTGACAGCATTGTCACGGAATTTGATTATTTGCTTTTCACATCATTAACAAGCATATATGATTTAGTGCTG
CCAATTGAGGAGGAAGGTGAAGGATAA
Antitoxin
Download Length: 57 a.a. Molecular weight: 6555.59 Da Isoelectric Point: 10.8401
>AT25659 WP_003239095.1 NC_016047:c1455249-1455079 [Bacillus subtilis subsp. spizizenii TU-B-10]
MERAFQNGCEPRAAKPFKILKKRSTTSVASYQVSPHTARIFKENERLIDEYKRKKA
MERAFQNGCEPRAAKPFKILKKRSTTSVASYQVSPHTARIFKENERLIDEYKRKKA
Download Length: 171 bp
>AT25659 NC_016047:c1455249-1455079 [Bacillus subtilis subsp. spizizenii TU-B-10]
ATGGAACGCGCATTTCAAAACGGATGCGAGCCCCGAGCGGCGAAGCCGTTTAAAATCCTGAAAAAACGTTCAACTACCAG
TGTCGCGAGCTATCAAGTCAGTCCGCATACTGCAAGAATCTTCAAAGAAAACGAACGGCTGATTGACGAGTATAAACGAA
AAAAAGCATGA
ATGGAACGCGCATTTCAAAACGGATGCGAGCCCCGAGCGGCGAAGCCGTTTAAAATCCTGAAAAAACGTTCAACTACCAG
TGTCGCGAGCTATCAAGTCAGTCCGCATACTGCAAGAATCTTCAAAGAAAACGAACGGCTGATTGACGAGTATAAACGAA
AAAAAGCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|