Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2296713..2296981 | Replicon | chromosome |
| Accession | NZ_CP103755 | ||
| Organism | Escherichia coli strain p11B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2296841..2296943 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2296713..2296981 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYO14_RS11280 | 2293266..2293928 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NYO14_RS11285 | 2293952..2294608 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NYO14_RS11290 | 2294710..2294940 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NYO14_RS11295 | 2295079..2295453 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NYO14_RS11300 | 2295457..2296329 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| NYO14_RS11305 | 2296342..2296683 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2296713..2296981 | - | 269 | - | - | Antitoxin |
| - | 2296841..2296943 | + | 103 | - | - | Toxin |
| NYO14_RS11310 | 2297078..2297734 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| NYO14_RS11315 | 2297735..2297926 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NYO14_RS11320 | 2298031..2298267 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NYO14_RS11325 | 2298384..2299823 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2216164..2312820 | 96656 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T256533 NZ_CP103755:2296841-2296943 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT256533 NZ_CP103755:c2296981-2296713 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
