Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 952307..952961 Replicon chromosome
Accession NZ_CP103755
Organism Escherichia coli strain p11B

Toxin (Protein)


Gene name cptA Uniprot ID F4T2L4
Locus tag NYO14_RS04715 Protein ID WP_000244765.1
Coordinates 952554..952961 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID F4T2L5
Locus tag NYO14_RS04710 Protein ID WP_000354050.1
Coordinates 952307..952573 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NYO14_RS04690 (948395) 948395..949828 - 1434 WP_001296350.1 6-phospho-beta-glucosidase BglA -
NYO14_RS04695 (949873) 949873..950184 + 312 WP_001182956.1 N(4)-acetylcytidine aminohydrolase -
NYO14_RS04700 (950348) 950348..951007 + 660 WP_000250275.1 hemolysin III family protein -
NYO14_RS04705 (951084) 951084..952064 - 981 WP_000886084.1 tRNA-modifying protein YgfZ -
NYO14_RS04710 (952307) 952307..952573 + 267 WP_000354050.1 FAD assembly factor SdhE Antitoxin
NYO14_RS04715 (952554) 952554..952961 + 408 WP_000244765.1 protein YgfX Toxin
NYO14_RS04720 (953001) 953001..953522 - 522 WP_001055874.1 flavodoxin FldB -
NYO14_RS04725 (953634) 953634..954530 + 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
NYO14_RS04730 (954555) 954555..955265 + 711 WP_000715230.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
NYO14_RS04735 (955271) 955271..957004 + 1734 WP_000813195.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16043.95 Da        Isoelectric Point: 11.5202

>T256530 WP_000244765.1 NZ_CP103755:952554-952961 [Escherichia coli]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLIPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDSGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10535.07 Da        Isoelectric Point: 5.1599

>AT256530 WP_000354050.1 NZ_CP103755:952307-952573 [Escherichia coli]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRTFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A454A7D7

Antitoxin

Source ID Structure
AlphaFold DB A0A061L3F4

References