Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1856867..1857012 | Replicon | chromosome |
| Accession | NZ_CP103727 | ||
| Organism | Klebsiella pneumoniae strain 2289 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1856903..1857005 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1856867..1857012 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T50_RS09100 | 1851997..1854057 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M5T50_RS09105 | 1854061..1854720 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M5T50_RS09110 | 1854799..1855029 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M5T50_RS09115 | 1855142..1855516 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M5T50_RS09120 | 1855520..1856389 | + | 870 | WP_128337570.1 | copper homeostasis membrane protein CopD | - |
| M5T50_RS09125 | 1856406..1856744 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1856867..1857012 | - | 146 | - | - | Antitoxin |
| - | 1856903..1857005 | + | 103 | - | - | Toxin |
| M5T50_RS09130 | 1857380..1857523 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M5T50_RS09135 | 1857628..1858596 | - | 969 | WP_074426446.1 | VirK/YbjX family protein | - |
| M5T50_RS09140 | 1858753..1859406 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| M5T50_RS09145 | 1859403..1859594 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M5T50_RS09150 | 1859692..1859931 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M5T50_RS09155 | 1860047..1861480 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T256376 NZ_CP103727:1856903-1857005 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT256376 NZ_CP103727:c1857012-1856867 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
