Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2853674..2853883 | Replicon | chromosome |
| Accession | NZ_CP103722 | ||
| Organism | Enterobacter hormaechei strain 3131 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2853687..2853790 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2853674..2853883 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5R19_RS13795 (M5R19_13795) | 2849942..2851390 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M5R19_RS13800 (M5R19_13800) | 2851497..2851736 | + | 240 | WP_003859885.1 | YebV family protein | - |
| M5R19_RS13805 (M5R19_13805) | 2851771..2852415 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| M5R19_RS13810 (M5R19_13810) | 2852583..2853563 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| M5R19_RS13815 (M5R19_13815) | 2853609..2853806 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2853674..2853883 | + | 210 | - | - | Antitoxin |
| - | 2853687..2853790 | - | 104 | - | - | Toxin |
| M5R19_RS13820 (M5R19_13820) | 2853932..2854270 | - | 339 | WP_003859787.1 | YebY family protein | - |
| M5R19_RS13825 (M5R19_13825) | 2854287..2855156 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| M5R19_RS13830 (M5R19_13830) | 2855158..2855529 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| M5R19_RS13835 (M5R19_13835) | 2855667..2855897 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| M5R19_RS13840 (M5R19_13840) | 2856009..2856659 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| M5R19_RS13845 (M5R19_13845) | 2856684..2857346 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T256365 NZ_CP103722:c2853790-2853687 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT256365 NZ_CP103722:2853674-2853883 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
