Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2074761..2075029 | Replicon | chromosome |
| Accession | NZ_CP103710 | ||
| Organism | Escherichia coli O25b:H4-ST131 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2074889..2074991 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2074761..2075029 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S69_RS10030 | 2071314..2071976 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M5S69_RS10035 | 2072000..2072656 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5S69_RS10040 | 2072758..2072988 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5S69_RS10045 | 2073127..2073501 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M5S69_RS10050 | 2073505..2074377 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| M5S69_RS10055 | 2074390..2074731 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2074761..2075029 | - | 269 | - | - | Antitoxin |
| - | 2074889..2074991 | + | 103 | - | - | Toxin |
| M5S69_RS10060 | 2075126..2075782 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| M5S69_RS10065 | 2075783..2075974 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M5S69_RS10070 | 2076079..2076315 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M5S69_RS10075 | 2076432..2077871 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T256281 NZ_CP103710:2074889-2074991 [Escherichia coli O25b:H4-ST131]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT256281 NZ_CP103710:c2075029-2074761 [Escherichia coli O25b:H4-ST131]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
