Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2745593..2745765 | Replicon | chromosome |
| Accession | NC_015968 | ||
| Organism | Enterobacter asburiae LF7a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2745598..2745702 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2745593..2745765 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ENTAS_RS12855 | 2741746..2743209 | + | 1464 | WP_014070669.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ENTAS_RS12860 | 2743316..2743555 | + | 240 | WP_014070670.1 | YebV family protein | - |
| ENTAS_RS12865 | 2743594..2744238 | - | 645 | WP_014070671.1 | protein-serine/threonine phosphatase | - |
| ENTAS_RS12870 | 2744418..2745359 | + | 942 | WP_014070672.1 | VirK/YbjX family protein | - |
| - | 2745593..2745765 | + | 173 | - | - | Antitoxin |
| - | 2745598..2745702 | - | 105 | - | - | Toxin |
| ENTAS_RS12875 | 2745840..2746178 | - | 339 | WP_014070673.1 | YebY family protein | - |
| ENTAS_RS12880 | 2746193..2747062 | - | 870 | WP_014070674.1 | copper homeostasis membrane protein CopD | - |
| ENTAS_RS12885 | 2747064..2747438 | - | 375 | WP_014070675.1 | CopC domain-containing protein YobA | - |
| ENTAS_RS12890 | 2747576..2747806 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| ENTAS_RS12895 | 2747916..2748566 | + | 651 | WP_014070676.1 | carbon-nitrogen hydrolase family protein | - |
| ENTAS_RS12900 | 2748591..2749253 | + | 663 | WP_014070677.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T25627 NC_015968:c2745702-2745598 [Enterobacter soli]
GGCAAGGCGATTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 173 bp
>AT25627 NC_015968:2745593-2745765 [Enterobacter soli]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAAATCGCCTTGCCTTTTAAGAATAGATGAGAGCGCCAGGTTTTCCAGTCCACGGTAAAAGTGG
CCTAAAAAAAGCG
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAAATCGCCTTGCCTTTTAAGAATAGATGAGAGCGCCAGGTTTTCCAGTCCACGGTAAAAGTGG
CCTAAAAAAAGCG
