Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 718566..718711 | Replicon | chromosome |
| Accession | NZ_CP103697 | ||
| Organism | Klebsiella pneumoniae strain ST3576 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 718602..718704 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 718566..718711 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5R27_RS03310 (M5R27_03310) | 713696..715756 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| M5R27_RS03315 (M5R27_03315) | 715760..716419 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M5R27_RS03320 (M5R27_03320) | 716498..716728 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M5R27_RS03325 (M5R27_03325) | 716841..717215 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M5R27_RS03330 (M5R27_03330) | 717219..718088 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| M5R27_RS03335 (M5R27_03335) | 718105..718443 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 718566..718711 | - | 146 | - | - | Antitoxin |
| - | 718602..718704 | + | 103 | - | - | Toxin |
| M5R27_RS03340 (M5R27_03340) | 719079..719222 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M5R27_RS03345 (M5R27_03345) | 719327..720295 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M5R27_RS03350 (M5R27_03350) | 720452..721105 | + | 654 | WP_121915274.1 | protein-serine/threonine phosphatase | - |
| M5R27_RS03355 (M5R27_03355) | 721102..721293 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M5R27_RS03360 (M5R27_03360) | 721391..721630 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M5R27_RS03365 (M5R27_03365) | 721746..723179 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T256217 NZ_CP103697:718602-718704 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT256217 NZ_CP103697:c718711-718566 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
