Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1987040..1987311 | Replicon | chromosome |
| Accession | NZ_CP103694 | ||
| Organism | Escherichia coli strain ST12468 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1987170..1987273 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1987040..1987311 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T31_RS09755 | 1983595..1984257 | - | 663 | WP_000944255.1 | exodeoxyribonuclease X | - |
| M5T31_RS09760 | 1984281..1984937 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5T31_RS09765 | 1985039..1985269 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5T31_RS09770 | 1985408..1985782 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M5T31_RS09775 | 1985786..1986658 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| M5T31_RS09780 | 1986671..1987012 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1987040..1987311 | - | 272 | - | - | Antitoxin |
| - | 1987170..1987273 | + | 104 | - | - | Toxin |
| M5T31_RS09785 | 1987408..1988064 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| M5T31_RS09790 | 1988065..1988256 | - | 192 | WP_001338167.1 | YebW family protein | - |
| M5T31_RS09795 | 1988361..1988597 | - | 237 | WP_001338166.1 | YebV family protein | - |
| M5T31_RS09800 | 1988715..1990154 | - | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T256201 NZ_CP103694:1987170-1987273 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT256201 NZ_CP103694:c1987311-1987040 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
