Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2689499..2689697 | Replicon | chromosome |
| Accession | NZ_CP103683 | ||
| Organism | Enterobacter hormaechei strain ST90 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2689501..2689604 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2689499..2689697 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S84_RS12800 (M5S84_12800) | 2685113..2687091 | + | 1979 | Protein_2504 | DNA cytosine methyltransferase | - |
| M5S84_RS12805 (M5S84_12805) | 2687183..2687398 | + | 216 | WP_063847882.1 | TraR/DksA family transcriptional regulator | - |
| M5S84_RS12810 (M5S84_12810) | 2687455..2687976 | + | 522 | WP_049125635.1 | hypothetical protein | - |
| M5S84_RS12815 (M5S84_12815) | 2688097..2688369 | + | 273 | WP_063847881.1 | excisionase | - |
| M5S84_RS12820 (M5S84_12820) | 2688338..2689423 | + | 1086 | WP_059364220.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2689499..2689697 | + | 199 | - | - | Antitoxin |
| - | 2689501..2689604 | - | 104 | - | - | Toxin |
| M5S84_RS12825 (M5S84_12825) | 2689746..2690084 | - | 339 | WP_033486805.1 | YebY family protein | - |
| M5S84_RS12830 (M5S84_12830) | 2690101..2690970 | - | 870 | WP_017384341.1 | copper homeostasis membrane protein CopD | - |
| M5S84_RS12835 (M5S84_12835) | 2690972..2691343 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| M5S84_RS12840 (M5S84_12840) | 2691481..2691711 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| M5S84_RS12845 (M5S84_12845) | 2691823..2692473 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| M5S84_RS12850 (M5S84_12850) | 2692497..2693159 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2657113..2695216 | 38103 | |
| - | inside | Prophage | - | gtrA / gtrB | 2668508..2710448 | 41940 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T256166 NZ_CP103683:c2689604-2689501 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 199 bp
>AT256166 NZ_CP103683:2689499-2689697 [Enterobacter hormaechei]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGTCTG
AAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGTCTG
AAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
