Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2728676..2728885 | Replicon | chromosome |
| Accession | NZ_CP103674 | ||
| Organism | Enterobacter hormaechei strain 1074 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2728689..2728792 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2728676..2728885 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T14_RS12970 (M5T14_12970) | 2724944..2726392 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M5T14_RS12975 (M5T14_12975) | 2726499..2726738 | + | 240 | WP_003859885.1 | YebV family protein | - |
| M5T14_RS12980 (M5T14_12980) | 2726773..2727417 | - | 645 | WP_259384918.1 | protein-serine/threonine phosphatase | - |
| M5T14_RS12985 (M5T14_12985) | 2727585..2728565 | + | 981 | WP_259384919.1 | VirK/YbjX family protein | - |
| M5T14_RS12990 (M5T14_12990) | 2728611..2728808 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2728676..2728885 | + | 210 | - | - | Antitoxin |
| - | 2728689..2728792 | - | 104 | - | - | Toxin |
| M5T14_RS12995 (M5T14_12995) | 2728933..2729271 | - | 339 | WP_003859787.1 | YebY family protein | - |
| M5T14_RS13000 (M5T14_13000) | 2729288..2730157 | - | 870 | WP_259384920.1 | copper homeostasis membrane protein CopD | - |
| M5T14_RS13005 (M5T14_13005) | 2730159..2730530 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| M5T14_RS13010 (M5T14_13010) | 2730668..2730898 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| M5T14_RS13015 (M5T14_13015) | 2731010..2731660 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| M5T14_RS13020 (M5T14_13020) | 2731685..2732347 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T256118 NZ_CP103674:c2728792-2728689 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT256118 NZ_CP103674:2728676-2728885 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
