Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2794767..2795038 | Replicon | chromosome |
| Accession | NZ_CP103673 | ||
| Organism | Escherichia coli strain 4069 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2794805..2794908 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2794767..2795038 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M4U10_RS13285 | 2791924..2793363 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M4U10_RS13290 | 2793481..2793717 | + | 237 | WP_001295499.1 | YebV family protein | - |
| M4U10_RS13295 | 2793822..2794013 | + | 192 | WP_001296140.1 | YebW family protein | - |
| M4U10_RS13300 | 2794014..2794670 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 2794767..2795038 | + | 272 | - | - | Antitoxin |
| - | 2794805..2794908 | - | 104 | - | - | Toxin |
| M4U10_RS13305 | 2795066..2795407 | - | 342 | WP_000976472.1 | YebY family protein | - |
| M4U10_RS13310 | 2795420..2796292 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| M4U10_RS13315 | 2796296..2796670 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M4U10_RS13320 | 2796809..2797039 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M4U10_RS13325 | 2797141..2797797 | + | 657 | WP_076797519.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M4U10_RS13330 | 2797821..2798483 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2786537..2818823 | 32286 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T256103 NZ_CP103673:c2794908-2794805 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT256103 NZ_CP103673:2794767-2795038 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
