Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2201204..2201475 | Replicon | chromosome |
| Accession | NZ_CP103657 | ||
| Organism | Escherichia coli strain 3150 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2201334..2201437 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2201204..2201475 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5R25_RS10375 | 2197759..2198421 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M5R25_RS10380 | 2198445..2199101 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5R25_RS10385 | 2199203..2199433 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5R25_RS10390 | 2199572..2199946 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| M5R25_RS10395 | 2199950..2200822 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| M5R25_RS10400 | 2200835..2201176 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2201204..2201475 | - | 272 | - | - | Antitoxin |
| - | 2201334..2201437 | + | 104 | - | - | Toxin |
| M5R25_RS10405 | 2201572..2202228 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| M5R25_RS10410 | 2202229..2202420 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M5R25_RS10415 | 2202525..2202761 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M5R25_RS10420 | 2202879..2204318 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T256046 NZ_CP103657:2201334-2201437 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT256046 NZ_CP103657:c2201475-2201204 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
