Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/PRK09907-MazE
Location 1169223..1169806 Replicon chromosome
Accession NZ_CP103657
Organism Escherichia coli strain 3150

Toxin (Protein)


Gene name mazF Uniprot ID V0SV58
Locus tag M5R25_RS05570 Protein ID WP_000254750.1
Coordinates 1169471..1169806 (+) Length 112 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID S1P3W5
Locus tag M5R25_RS05565 Protein ID WP_000581937.1
Coordinates 1169223..1169471 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
M5R25_RS05555 (1165562) 1165562..1166863 + 1302 WP_000046818.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
M5R25_RS05560 (1166911) 1166911..1169145 + 2235 WP_000226815.1 GTP pyrophosphokinase -
M5R25_RS05565 (1169223) 1169223..1169471 + 249 WP_000581937.1 type II toxin-antitoxin system antitoxin MazE Antitoxin
M5R25_RS05570 (1169471) 1169471..1169806 + 336 WP_000254750.1 endoribonuclease MazF Toxin
M5R25_RS05575 (1169878) 1169878..1170669 + 792 WP_001071641.1 nucleoside triphosphate pyrophosphohydrolase -
M5R25_RS05580 (1170897) 1170897..1172534 + 1638 WP_000210878.1 CTP synthase (glutamine hydrolyzing) -
M5R25_RS05585 (1172621) 1172621..1173919 + 1299 WP_000036723.1 phosphopyruvate hydratase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(10-109)

Antitoxin

SpoVT-AbrB domain

(7-51)


Sequences

Toxin        


Download         Length: 112 a.a.        Molecular weight: 12067.95 Da        Isoelectric Point: 8.2618

>T256044 WP_000254750.1 NZ_CP103657:1169471-1169806 [Escherichia coli]
MVSRYVPDTGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKS
IAWRARGATKKGTVAPEELQLIKAKINVLIG

Download         Length: 336 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9355.74 Da        Isoelectric Point: 4.4665

>AT256044 WP_000581937.1 NZ_CP103657:1169223-1169471 [Escherichia coli]
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKE
VW

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB V0SV58

Antitoxin

Source ID Structure
PDB 1UB4
PDB 5CQX
PDB 5CQY
PDB 1MVF
PDB 2MRN
PDB 2MRU
AlphaFold DB A0A7U9LMB4

References