Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1986013..1986158 | Replicon | chromosome |
| Accession | NZ_CP103654 | ||
| Organism | Klebsiella pneumoniae strain 1159 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1986049..1986151 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1986013..1986158 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S75_RS09730 | 1981143..1983203 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| M5S75_RS09735 | 1983207..1983866 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| M5S75_RS09740 | 1983945..1984175 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M5S75_RS09745 | 1984288..1984662 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M5S75_RS09750 | 1984666..1985535 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| M5S75_RS09755 | 1985552..1985890 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1986013..1986158 | - | 146 | - | - | Antitoxin |
| - | 1986049..1986151 | + | 103 | - | - | Toxin |
| M5S75_RS09760 | 1986526..1986669 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M5S75_RS09765 | 1986774..1987742 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M5S75_RS09770 | 1987899..1988552 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| M5S75_RS09775 | 1988549..1988740 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M5S75_RS09780 | 1988838..1989077 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M5S75_RS09785 | 1989193..1990626 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T256027 NZ_CP103654:1986049-1986151 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT256027 NZ_CP103654:c1986158-1986013 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
