Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1968386..1968532 | Replicon | chromosome |
| Accession | NZ_CP103639 | ||
| Organism | Klebsiella aerogenes strain 722 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1968421..1968524 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1968386..1968532 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T48_RS09205 (M5T48_09205) | 1963495..1965555 | + | 2061 | WP_032705952.1 | oligopeptidase B | - |
| M5T48_RS09210 (M5T48_09210) | 1965558..1966217 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| M5T48_RS09215 (M5T48_09215) | 1966297..1966527 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| M5T48_RS09220 (M5T48_09220) | 1966662..1967036 | + | 375 | WP_015366008.1 | CopC domain-containing protein YobA | - |
| M5T48_RS09225 (M5T48_09225) | 1967040..1967909 | + | 870 | WP_032705951.1 | copper homeostasis membrane protein CopD | - |
| M5T48_RS09230 (M5T48_09230) | 1967923..1968264 | + | 342 | WP_015366010.1 | YebY family protein | - |
| - | 1968386..1968532 | - | 147 | - | - | Antitoxin |
| - | 1968421..1968524 | + | 104 | - | - | Toxin |
| M5T48_RS09235 (M5T48_09235) | 1968652..1969605 | - | 954 | WP_072207417.1 | spore coat U domain-containing protein | - |
| M5T48_RS09240 (M5T48_09240) | 1969618..1971942 | - | 2325 | WP_032705949.1 | fimbria/pilus outer membrane usher protein | - |
| M5T48_RS09245 (M5T48_09245) | 1971945..1972694 | - | 750 | WP_015366013.1 | molecular chaperone | - |
| M5T48_RS09250 (M5T48_09250) | 1972712..1973230 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255973 NZ_CP103639:1968421-1968524 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT255973 NZ_CP103639:c1968532-1968386 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
