Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2191247..2191518 | Replicon | chromosome |
| Accession | NZ_CP103633 | ||
| Organism | Escherichia coli strain 2900 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2191377..2191480 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2191247..2191518 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S90_RS10355 | 2187802..2188464 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M5S90_RS10360 | 2188488..2189144 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5S90_RS10365 | 2189246..2189476 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5S90_RS10370 | 2189615..2189989 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| M5S90_RS10375 | 2189993..2190865 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| M5S90_RS10380 | 2190878..2191219 | + | 342 | WP_001520705.1 | YebY family protein | - |
| - | 2191247..2191518 | - | 272 | - | - | Antitoxin |
| - | 2191377..2191480 | + | 104 | - | - | Toxin |
| M5S90_RS10385 | 2191615..2192271 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| M5S90_RS10390 | 2192272..2192463 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M5S90_RS10395 | 2192568..2192804 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M5S90_RS10400 | 2192922..2194361 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255930 NZ_CP103633:2191377-2191480 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT255930 NZ_CP103633:c2191518-2191247 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
