Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2003737..2004008 | Replicon | chromosome |
| Accession | NZ_CP103623 | ||
| Organism | Escherichia coli strain 3985 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2003867..2003970 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2003737..2004008 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T36_RS09745 | 2000292..2000954 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M5T36_RS09750 | 2000978..2001634 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5T36_RS09755 | 2001736..2001966 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5T36_RS09760 | 2002105..2002479 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| M5T36_RS09765 | 2002483..2003355 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| M5T36_RS09770 | 2003368..2003709 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2003737..2004008 | - | 272 | - | - | Antitoxin |
| - | 2003867..2003970 | + | 104 | - | - | Toxin |
| M5T36_RS09775 | 2004105..2004761 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| M5T36_RS09780 | 2004762..2004953 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M5T36_RS09785 | 2005058..2005294 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M5T36_RS09790 | 2005412..2006851 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255877 NZ_CP103623:2003867-2003970 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT255877 NZ_CP103623:c2004008-2003737 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
