Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1900582..1900727 | Replicon | chromosome |
| Accession | NZ_CP103614 | ||
| Organism | Klebsiella pneumoniae strain 3571 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1900618..1900720 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1900582..1900727 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T29_RS09220 (M5T29_09220) | 1895712..1897772 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| M5T29_RS09225 (M5T29_09225) | 1897776..1898435 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M5T29_RS09230 (M5T29_09230) | 1898514..1898744 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M5T29_RS09235 (M5T29_09235) | 1898857..1899231 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M5T29_RS09240 (M5T29_09240) | 1899235..1900104 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| M5T29_RS09245 (M5T29_09245) | 1900121..1900459 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1900582..1900727 | - | 146 | - | - | Antitoxin |
| - | 1900618..1900720 | + | 103 | - | - | Toxin |
| M5T29_RS09250 (M5T29_09250) | 1901095..1901238 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M5T29_RS09255 (M5T29_09255) | 1901343..1902311 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M5T29_RS09260 (M5T29_09260) | 1902468..1903121 | + | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| M5T29_RS09265 (M5T29_09265) | 1903118..1903309 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M5T29_RS09270 (M5T29_09270) | 1903407..1903646 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M5T29_RS09275 (M5T29_09275) | 1903762..1905195 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T255829 NZ_CP103614:1900618-1900720 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT255829 NZ_CP103614:c1900727-1900582 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
