Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3002187..3002338 | Replicon | chromosome |
| Accession | NZ_CP103611 | ||
| Organism | Enterobacter cloacae strain 3143 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3002200..3002303 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3002187..3002338 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S62_RS14345 (M5S62_14345) | 2998463..2999905 | + | 1443 | WP_047352451.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M5S62_RS14350 (M5S62_14350) | 3000011..3000250 | + | 240 | WP_047352450.1 | YebV family protein | - |
| M5S62_RS14355 (M5S62_14355) | 3000284..3000928 | - | 645 | WP_259387384.1 | protein-serine/threonine phosphatase | - |
| M5S62_RS14360 (M5S62_14360) | 3001095..3002036 | + | 942 | WP_047352448.1 | VirK/YbjX family protein | - |
| - | 3002187..3002338 | + | 152 | - | - | Antitoxin |
| - | 3002200..3002303 | - | 104 | - | - | Toxin |
| M5S62_RS14365 (M5S62_14365) | 3002444..3002782 | - | 339 | WP_013096105.1 | YebY family protein | - |
| M5S62_RS14370 (M5S62_14370) | 3002799..3003668 | - | 870 | WP_057071812.1 | copper homeostasis membrane protein CopD | - |
| M5S62_RS14375 (M5S62_14375) | 3003670..3004041 | - | 372 | WP_020690820.1 | CopC domain-containing protein YobA | - |
| M5S62_RS14380 (M5S62_14380) | 3004179..3004409 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| M5S62_RS14385 (M5S62_14385) | 3004518..3005168 | + | 651 | WP_045294396.1 | carbon-nitrogen hydrolase family protein | - |
| M5S62_RS14390 (M5S62_14390) | 3005192..3005854 | + | 663 | WP_129327372.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255816 NZ_CP103611:c3002303-3002200 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT255816 NZ_CP103611:3002187-3002338 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
