Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2837851..2838122 | Replicon | chromosome |
| Accession | NZ_CP103609 | ||
| Organism | Escherichia coli strain 4314 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2837889..2837992 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2837851..2838122 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S83_RS13705 | 2835008..2836447 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M5S83_RS13710 | 2836565..2836801 | + | 237 | WP_001295499.1 | YebV family protein | - |
| M5S83_RS13715 | 2836906..2837097 | + | 192 | WP_001296140.1 | YebW family protein | - |
| M5S83_RS13720 | 2837098..2837754 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2837851..2838122 | + | 272 | - | - | Antitoxin |
| - | 2837889..2837992 | - | 104 | - | - | Toxin |
| M5S83_RS13725 | 2838150..2838491 | - | 342 | WP_000976472.1 | YebY family protein | - |
| M5S83_RS13730 | 2838504..2839376 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| M5S83_RS13735 | 2839380..2839754 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| M5S83_RS13740 | 2839893..2840123 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5S83_RS13745 | 2840225..2840881 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5S83_RS13750 | 2840905..2841567 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255800 NZ_CP103609:c2837992-2837889 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT255800 NZ_CP103609:2837851-2838122 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
