Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2205918..2206186 | Replicon | chromosome |
| Accession | NZ_CP103592 | ||
| Organism | Escherichia coli O25b:H4-ST131 strain 4224 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2206046..2206148 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2205918..2206186 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S53_RS10605 | 2202471..2203133 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M5S53_RS10610 | 2203157..2203813 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5S53_RS10615 | 2203915..2204145 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5S53_RS10620 | 2204284..2204658 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M5S53_RS10625 | 2204662..2205534 | + | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| M5S53_RS10630 | 2205547..2205888 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2205918..2206186 | - | 269 | - | - | Antitoxin |
| - | 2206046..2206148 | + | 103 | - | - | Toxin |
| M5S53_RS10635 | 2206283..2206939 | + | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| M5S53_RS10640 | 2206940..2207131 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M5S53_RS10645 | 2207236..2207472 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M5S53_RS10650 | 2207589..2209028 | - | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T255729 NZ_CP103592:2206046-2206148 [Escherichia coli O25b:H4-ST131]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT255729 NZ_CP103592:c2206186-2205918 [Escherichia coli O25b:H4-ST131]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
