Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 1777618..1778211 Replicon chromosome
Accession NC_015856
Organism Collimonas fungivorans Ter331

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag CFU_RS07775 Protein ID WP_041741509.1
Coordinates 1777618..1777908 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CFU_RS07780 Protein ID WP_014005485.1
Coordinates 1777918..1778211 (+) Length 98 a.a.

Genomic Context

CFU_RS07765CFU_RS07770CFU_RS07775CFU_RS07780CFU_RS07785CFU_RS07790CFU_RS23745CFU_RS07795CFU_RS07800
Location: 1772798..1775893 (3096 bp)
Type: Others
Protein ID: WP_014005482.1
Location: 1775926..1777401 (1476 bp)
Type: Others
Protein ID: WP_041741507.1
Location: 1777618..1777908 (291 bp)
Type: Toxin
Protein ID: WP_041741509.1
Location: 1777918..1778211 (294 bp)
Type: Antitoxin
Protein ID: WP_014005485.1
Location: 1778641..1780548 (1908 bp)
Type: Others
Protein ID: WP_041743122.1
Location: 1780609..1781133 (525 bp)
Type: Others
Protein ID: WP_081466431.1
Location: 1781329..1781526 (198 bp)
Type: Others
Protein ID: WP_014005488.1
Location: 1781550..1781909 (360 bp)
Type: Others
Protein ID: WP_014005489.1
Location: 1782069..1783087 (1019 bp)
Type: Others
Protein ID: Protein_1578
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
CFU_RS077651772798..1775893+3096WP_014005482.1efflux RND transporter permease subunit-
CFU_RS077701775926..1777401+1476WP_041741507.1efflux transporter outer membrane subunit-
CFU_RS077751777618..1777908+291WP_041741509.1type II toxin-antitoxin system RelE/ParE family toxinToxin
CFU_RS077801777918..1778211+294WP_014005485.1putative addiction module antidote proteinAntitoxin
CFU_RS077851778641..1780548+1908WP_041743122.1threonine--tRNA ligase-
CFU_RS077901780609..1781133+525WP_081466431.1translation initiation factor IF-3-
CFU_RS237451781329..1781526+198WP_014005488.150S ribosomal protein L35-
CFU_RS077951781550..1781909+360WP_014005489.150S ribosomal protein L20-
CFU_RS078001782069..1783087+1019Protein_1578phenylalanine--tRNA ligase subunit alpha-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(4-95)

Antitoxin

Cro/C1-type helix-turn-helix domain

(48-92)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10786.62 Da        Isoelectric Point: 10.3161

>T25567 WP_041741509.1 NC_015856:1777618-1777908 [Collimonas fungivorans Ter331]
VKIIQTTPIFDHWFASLRDRSAKVRIQMRIDRAELGNFGDCAPVGEGVSEMRIHFGCGYRIYFVQRGDEMVVLLAGGGKS
TQSKDVKMALKLARKL

Download         Length: 291 bp

>T25567 NC_015856:1777618-1777908 [Collimonas fungivorans Ter331]
GTGAAGATTATTCAAACCACTCCGATATTTGATCATTGGTTTGCTTCATTGCGCGACCGCAGCGCCAAGGTGCGCATCCA
GATGCGCATTGATCGTGCCGAGCTGGGTAATTTTGGCGATTGCGCACCGGTCGGAGAGGGTGTTTCCGAGATGCGGATTC
ATTTTGGCTGCGGCTACCGCATATATTTTGTGCAGCGTGGCGATGAAATGGTGGTATTGCTTGCCGGTGGCGGGAAGTCG
ACACAAAGCAAGGACGTCAAGATGGCATTGAAGCTGGCGCGGAAACTTTAG

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 10312.75 Da        Isoelectric Point: 6.2135

>AT25567 WP_014005485.1 NC_015856:1777918-1778211 [Collimonas fungivorans Ter331]
MGTIKLRQWDSAEHLQTGADIVAYFDACLEEAGDDPAFIAHALGNIARARGMSQVARDAGLARESLYKALSGEGNPEFGT
ILKVMKALGLRLHATAA

Download         Length: 294 bp

>AT25567 NC_015856:1777918-1778211 [Collimonas fungivorans Ter331]
ATGGGAACGATCAAACTGCGTCAGTGGGATTCTGCCGAGCATCTGCAAACCGGCGCCGATATCGTTGCCTATTTCGATGC
GTGTCTTGAAGAAGCGGGCGACGATCCTGCCTTCATCGCGCATGCCTTGGGCAATATTGCGCGCGCACGCGGCATGAGCC
AGGTGGCGCGGGATGCCGGCCTGGCGCGCGAAAGCCTGTATAAGGCGTTGTCCGGCGAGGGCAATCCAGAGTTCGGGACC
ATTCTGAAAGTCATGAAAGCGCTTGGGCTGAGGCTGCATGCGACGGCGGCATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References