Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 1892483..1892628 | Replicon | chromosome |
Accession | NZ_CP103582 | ||
Organism | Klebsiella pneumoniae strain 1498 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 1892519..1892621 (+) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 1892483..1892628 (-) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
M5S97_RS09145 (M5S97_09145) | 1887613..1889673 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
M5S97_RS09150 (M5S97_09150) | 1889677..1890336 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
M5S97_RS09155 (M5S97_09155) | 1890415..1890645 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
M5S97_RS09160 (M5S97_09160) | 1890758..1891132 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
M5S97_RS09165 (M5S97_09165) | 1891136..1892005 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
M5S97_RS09170 (M5S97_09170) | 1892022..1892360 | + | 339 | WP_016529031.1 | YebY family protein | - |
- | 1892483..1892628 | - | 146 | - | - | Antitoxin |
- | 1892519..1892621 | + | 103 | - | - | Toxin |
M5S97_RS09175 (M5S97_09175) | 1892996..1893139 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
M5S97_RS09180 (M5S97_09180) | 1893244..1894212 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
M5S97_RS09185 (M5S97_09185) | 1894369..1895022 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
M5S97_RS09190 (M5S97_09190) | 1895019..1895210 | - | 192 | WP_002911395.1 | YebW family protein | - |
M5S97_RS09195 (M5S97_09195) | 1895308..1895547 | - | 240 | WP_002911393.1 | YebV family protein | - |
M5S97_RS09200 (M5S97_09200) | 1895663..1897096 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T255663 NZ_CP103582:1892519-1892621 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT255663 NZ_CP103582:c1892628-1892483 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT