Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1854441..1854586 | Replicon | chromosome |
| Accession | NZ_CP103579 | ||
| Organism | Klebsiella pneumoniae strain 4014 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1854477..1854579 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1854441..1854586 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S61_RS09030 | 1849571..1851631 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| M5S61_RS09035 | 1851635..1852294 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M5S61_RS09040 | 1852373..1852603 | - | 231 | WP_048254886.1 | DNA polymerase III subunit theta | - |
| M5S61_RS09045 | 1852716..1853090 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M5S61_RS09050 | 1853094..1853963 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| M5S61_RS09055 | 1853980..1854318 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1854441..1854586 | - | 146 | - | - | Antitoxin |
| - | 1854477..1854579 | + | 103 | - | - | Toxin |
| M5S61_RS09060 | 1854954..1855097 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M5S61_RS09065 | 1855202..1856170 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M5S61_RS09070 | 1856327..1856980 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| M5S61_RS09075 | 1856977..1857168 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M5S61_RS09080 | 1857266..1857505 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M5S61_RS09085 | 1857621..1859054 | - | 1434 | WP_071081310.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T255648 NZ_CP103579:1854477-1854579 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT255648 NZ_CP103579:c1854586-1854441 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
