Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1972333..1972542 | Replicon | chromosome |
| Accession | NZ_CP103577 | ||
| Organism | Enterobacter hormaechei strain 4285 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1972426..1972529 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1972333..1972542 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5S64_RS09345 (M5S64_09345) | 1968870..1969532 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| M5S64_RS09350 (M5S64_09350) | 1969557..1970207 | - | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| M5S64_RS09355 (M5S64_09355) | 1970319..1970549 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| M5S64_RS09360 (M5S64_09360) | 1970687..1971058 | + | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| M5S64_RS09365 (M5S64_09365) | 1971060..1971929 | + | 870 | WP_045338991.1 | copper homeostasis membrane protein CopD | - |
| M5S64_RS09370 (M5S64_09370) | 1971946..1972284 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 1972333..1972542 | - | 210 | - | - | Antitoxin |
| M5S64_RS09375 (M5S64_09375) | 1972410..1972607 | - | 198 | WP_045338990.1 | hypothetical protein | - |
| - | 1972426..1972529 | + | 104 | - | - | Toxin |
| M5S64_RS09380 (M5S64_09380) | 1972653..1973633 | - | 981 | WP_039270562.1 | VirK/YbjX family protein | - |
| M5S64_RS09385 (M5S64_09385) | 1973801..1974445 | + | 645 | WP_017384338.1 | protein-serine/threonine phosphatase | - |
| M5S64_RS09390 (M5S64_09390) | 1974480..1974719 | - | 240 | WP_003859885.1 | YebV family protein | - |
| M5S64_RS09395 (M5S64_09395) | 1974826..1976274 | - | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255635 NZ_CP103577:1972426-1972529 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT255635 NZ_CP103577:c1972542-1972333 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
