Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3026298..3026569 | Replicon | chromosome |
| Accession | NZ_CP103559 | ||
| Organism | Escherichia coli strain 3059 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3026336..3026439 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3026298..3026569 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T18_RS14870 | 3023455..3024894 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| M5T18_RS14875 | 3025012..3025248 | + | 237 | WP_001295499.1 | YebV family protein | - |
| M5T18_RS14880 | 3025353..3025544 | + | 192 | WP_001296140.1 | YebW family protein | - |
| M5T18_RS14885 | 3025545..3026201 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 3026298..3026569 | + | 272 | - | - | Antitoxin |
| - | 3026336..3026439 | - | 104 | - | - | Toxin |
| M5T18_RS14890 | 3026597..3026938 | - | 342 | WP_000976472.1 | YebY family protein | - |
| M5T18_RS14895 | 3026951..3027823 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| M5T18_RS14900 | 3027827..3028201 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| M5T18_RS14905 | 3028340..3028570 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M5T18_RS14910 | 3028672..3029328 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M5T18_RS14915 | 3029352..3030014 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3010458..3113982 | 103524 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T255525 NZ_CP103559:c3026439-3026336 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT255525 NZ_CP103559:3026298-3026569 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
